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Biology Principal Investigators

School of Biology Principal Research Investigators

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Abbott, Prof Richard Professor
(School of Biology)
rja@st-and.ac.uk
01334 463350/3349
Plant evolution and systematics
keywords:
Biodiversity, Evolutionary biology, Plant biology, Population biology
Prof Richard Abbott

Plant evolution and systematics with emphasis on population genetic structure, mating system evolution, phylogeography, speciation, molecular systematics, and the developmental genetics of flowers. I have a particular interest in speciation in European Senecio, the evolutionary history of arctic plants, and genes influencing flower head development in the Asteraceae.


I study plant hybridization and speciation, phylogeography, molecular systematics and the molecular genetics of flower head development.

Research Group

Postdocs - Dr Guoqing Liu; Postgrads - Mr Joe Milton, Mr Gerld Hochschartner; Technician - Mr David Forbes

graphicHybridization and evolution

Interspecific hybridization occurs frequently in the plant kingdom and can result in interspecific gene flow and the origin of new allopolyploid and homoploid hybrid species. We are currently investigating the evolutionary consequences of hybridization in Senecio and Rhododendron .



Senecio Senecio

Recent hybridization in the British Isles between native groundsel, Senecio vulgaris , and the introduced Oxford ragwort, S. squalidus , has resulted in:

  1. the origin of a stabilised introgressant, S. vulgaris var. hibernicus;
  2. the independent origin of the allohexaploid, S. cambrensis , in N Wales and Edinburgh;
  3. the origin of the tetraploid hybrid species, S. eboracensis , in York.
These new taxa are being used as models for examining the origin and establishment of hybrid species in the wild (Mark Chapman, Helen Ireland). In addition, and as part of NERC's Environmental Genomics Initiative, research in collaboration with Simon Hiscock and Keith Edwards (Bristol University) is investigating changes to transcriptome and genome during hybrid speciation in Senecio . Microarray analysis is being used to investigate alterations to gene expression, while changes to genome is being monitored by comparing high-density genomic maps of parent and hybrid taxa (Guoqing Liu).
  • Abbott R.J, Lowe A.J (2004) Origins, establishment and evolution of new polyploid species: Seneciocambrensis and S. eboracensis in the British Isles. Biol. J. Linn. Soc. (Special issue, In press)
  • Lowe AJ, Abbott RJ (2004) Reproductive isolation of a new hybrid species, Senecio eboracensis Ê
    Abbott & Lowe. Heredity (In press)
  • Abbott R, James JK, Milne RI & Gillies ACM (2003) Plant introductions, hybridization and gene flow. Phil. Trans. Royal Soc. B 358: 1123-1132.
  • Abbott RJ (2003) Sex, sunflowers, and speciation. Science 301: 1189-1190.

Ê

RhododendronRhododendron

Many Rhododendron species are interfertile yet retain their identity in conditions of sympatry or parapatry. We have found a hybrid zone between two parapatric Rhododendron species in Turkey to be composed entirely of fertile F1 individuals (Richard Milne). The absence of later generation segregants and introgressants indicate that species barriers are maintained by severe post-F1 hybrid breakdown. We are currently investigating whether this phenomenon commonly maintains species barriers in the genus.
Rhododendron ponticum has become highly invasive in the British Isles following its introduction for horticultural purposes in the 18 th century. Molecular and morphological evidence shows that gene introgression has occurred from related R. catawbiense (also introduced) and may have led to an expansion of the range of R. ponticum into colder parts of the British Isles.

  • Milne RI, Terzioglu S, Abbott RJ (2003) A hybrid zone dominated by fertile F1s: Maintenance of species barriers in Rhododendron . Molecular Ecology 12: 2719-2729.
  • Milne RI, Abbott RJ (2000) Origin and evolution of invasive naturalised material of Rhododendron ponticum L. in the British Isles. Molecular Ecology 9: 541-556.

saxifrage.Phylogeography

A phylogeographic study of cpDNA variation in the arctic-alpine Purple saxifrage (Saxifraga oppositifolia) has provided evidence on how this species colonised the Arctic during the Pliocene, the locations of glacial refugia during Quaternary glaciations, and likely post-glacial migration routes during the Holocene. Phylogeographic analysis of Mediterranean Senecio based on surveys of cpDNA, ITS, RAPD and allozyme variation has provided information on how hybridisation and incomplete lineage sorting influences the partitioning of genetic variation within the group and has led to a better understanding of the group's evolutionary history.
  • Abbott RJ, Comes HP (2004) Evolution in the Arctic: A phylogeographic analysis of the circumarctic plant Saxifraga oppositifolia (Purple saxifrage). New Phytologist (Special issue) 161: 211-224.
  • Abbott RJ, Brochmann C (2003). History and evolution of the arctic flora: in the footsteps of Eric HultŽn. Molecular Ecology 12: 299-313.
  • Abbott RJ, Smith LC, Milne RI, Crawford RMM, Wolff K, Balfour J (2000) Molecular analysis of plant migration and evolution in the Arctic. Science 289: 1343-1346.
  • Comes HP , Abbott RJ (2001) Molecular phylogeography, reticulation and lineage sorting in the Mediterranean species complex of Senecio sect. Senecio (Asteraceae). Evolution 55: 1943-1962.

tree
Molecular systematics

We are currently investigating the molecular systematics of the Myricaceae (Jane Herbert) and Senecio section Senecio (Joe Milton). Ê The Senecio work expands on a study of Mediterranean Senecio to include a phylogenetic analysis of representative taxa from South Africa and Australia.

Coleman M, Liston A, Kadereit JW, Abbott RJ (2003) Repeat intercontinental dispersal and Pleistocene speciation in disjunct Mediterranean and desert Senecio (Asteraceae). Am. J. Bot. 90: 1446-1454.

scenico2Molecular genetics of flower head development in the Asteraceae

The polymorphism for radiate versus non-radiate capitulum type in Senecio vulgaris is being used to investigate the molecular genetics of flower head development in the Asteraceae in collaboration with Rico Coen FRS (John Innes Institute).

Gillies ACM, Cubas P, Coen E.S, Abbott RJ (2002) Making rays in the Asteraceae: genetics and evolution of variation for radiate versus discoid flower heads. In Cronk QCB, Bateman RM, Hawkins JA (eds.) Developmental Genetics and Plant Evolution . Taylor & Francis, London. pp. 233-246.




Barker, Dr Daniel Academic Fellow
(School of Biology)
db60@st-and.ac.uk
01334 463598
Bioinformatics and evolution
keywords:
Bioinformatics, Genomics
Dr Daniel Barker

My research is in bioinformatics, especially comparative genomics, protein interactions, functional annotation, adaptive significance of sequences and markers, and phylogeny.


Career History 

2005+. Research Councils UK Academic Fellow in evolutionary and functional genomics, School of Biology, University of St Andrews.

2002-2005. Research Fellow, School of Animal and Microbial Sciences, University of Reading.

2001-2002. Developer, Ensembl automated genome annotation project, Wellcome Trust Sanger Institute.

1999-2001. Software engineer, Edinburgh Design Centre, Analog Devices Inc.

1995-1999. PhD, "Simulated annealing in the search for phylogenetic trees", Institute of Cell and Molecular Biology, University of Edinburgh.

1992-1995. BA(Hons), Biological Sciences (Plant Sciences), University of Oxford.






Botting, Dr Catherine Research Fellow/ Honorary Lecturer
(School of Chemistry)
cb2@st-and.ac.uk
01334 467195
Dr Catherine Botting

More about Dr Catherine Botting:
School of Biology Staff Profile

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Boyd, Prof Ian Professor
(School of Biology)
ilb@st-and.ac.uk
01334 463628
Marine mammal ecology and behaviour
keywords:
Behavioural biology, Ecological modelling, Marine biology, Population biology
Prof Ian Boyd

Behavioural dynamics of marine predators

The application of scale-based theoretical and statistical models to examine single- and multi-dimensional behavioural vectors of marine predators, particularly in relation to the distribution of food patches. The objective of this research is to :

- develop and test dynamic models of the way in which predator fitness varies in relation to the distribution and abundance of food and of how this ultimately influences the evolution of life-histories and the viability of predators in different environments;

- characterise the functional relationship (in terms of fitness) of animals to environmental variability and thereby to develop a predictive framework for population trajectories under different environmental conditions;

- examine the impact of marine predators on their food supply.

Recently, this research interest has focused upon the behavioural responses of highly cryptic marine mammals to sound sources, including anti-submarine sonars. This research has also involved extensive studies of bioenergetics and behaviour including the use of remote tracking and recording technology, often using high capacity data streams. The results from these studies are providing the foundation for the development of algorithms to calculate the direction and dynamics of energy flux through predators populations and for solving problems in behavioural optimisation in particular circumstances.

 

Management of marine ecosystems

Development of ecosystem-based management procedures for the sustainable exploitation of marine resources. This interest lies at the interface between ecology, systems modelling and economics and applies risk-based modelling to decision-making in the context of environmental exploitation.

-use predators at the top of marine food chains as models of sustainable exploitation in marine ecosystems;

-through the use of signals from top food chain predators, to examine the underlying natural levels of variability from large-scale physical forcing of the ecosystem and to develop an appreciation of their role in marine resource management;

- to develop the conceptual and strategic models underlying ecosystem-based management

 

Ecological economics

This aims to bridge to gap between economics and ecology. Traditionally, ecological economics has stressed the importance of natural resources for commerce and conservation. In fact it covers the whole range of subjects from bioenergetics through to resource exploitation by commercial interests. The objectives are to:

- apply theory developed within economics to understanding the criteria used by animals when making investment decisions and also the evolutionary implications of those decisions.

- providing a better understanding of how we should place a value on natural resources (such as unexploited wildlife populations) which have no marketable value.


Behavioural dynamics of marine predators. The application of scale-based theoretical and statistical models to examine single- and multidimensional behavioural vectors of marine predators, particularly in relation to the distribution of food patches. The objective of this research is to :

* Develop and test dynamic models of the way in which predator fitness varies in relation to the distribution and abundance of food and of how this ultimately influences the evolution of life-histories and the viability of predators in different environments.
    * Characterise the functional relationship (in terms of fitness) of animals to environmental variability and thereby to develop a predictive framework for population trajectories under different environmental conditions.
      * Examine the impact of marine predators on their food supply. This research has involved extensive studies of bioenergetics and behaviour including the use of remote recording technology. The results from these studies are providing the foundation for the development of algorithms to calculate the direction and dynamics of energy flux through predators populations.

        Current Projects

        Life history optimisation and environmental variability in seals

        The abundance of Mammals in the Deep Oceans

        Behavioral responses of beaked whales and other deep-diving odontocetes to anthropogenic sounds


        MPhil/PhD project opportunities:

        MPhil/PhD

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        Brierley, Prof Andrew Professor in Biology
        (School of Biology)
        asb4@st-and.ac.uk
        01334 463458
        Ecology and biology of zooplankton
        keywords:
        Behavioural biology, Ecology, Evolutionary biology, Marine biology
        Prof Andrew Brierley

        We carry out research on the ecology and biology of zooplankton that live in the open ocean (the pelagic realm). We use combinations of acoustic (scientific echosounders) and netting techniques to sample zooplankton and gather data enabling us to estimate their abundance and map their distribution. We are seeking to understand processes that alter zooplankton abundance and distribution, and the consequences that changes in the zooplankton have for higher trophic levels (predators) and fisheries.


        We are develping Bayesian Maximum Entropy techniques to reconstruct distributions of organisms from sparse acosutic survey data.


        Please visit the Pelagic Ecology Research Group home page at

        http://www.st-and.ac.uk/~perg






        Coote, Dr Peter Lecturer
        (School of Biology)
        pjc5@st-and.ac.uk
        01334 463406
        Proteomic studies of fungi and bacterial pathogens
        keywords:
        Gene regulation, Microbiology, Molecular biology, Proteomics
        Dr Peter Coote

        Antifungals: understanding mode of action and resistance Food spoilage and human infection due to growth of fungi are serious global problems. Furthermore, the problems are exacerbated by increasing resistance to the few antifungal compounds currently available. Thus, there is a need to develop novel approaches to target these organisms. We are studying two different groups of antifungal compounds; organic acid preservatives, which are used in manufactured foods and beverages to prevent yeast spoilage; and, antifungal peptides, for example, ranalexin and dermaseptin, which are produced as part of the innate immune system of amphibian skin. In the lab, we are using modern functional genomics techniques, including proteomics, DNA microarrays and a library of deletion strains representing the entire yeast genome to obtain fundamental understanding of, the mode of action of the above compounds, and inducible mechanisms of resistance. More specifically, we are aiming to identify changes in global gene/protein expression occurring in response to exposure to these compounds and subsequently identify the role these genes play in either the mode of action or conferring resistance. We are also attempting to characterise which regulatory and signalling proteins detect, transmit and alter gene expression in response to exposure to these compounds.


        Antifungals: understanding mode of action and resistance

        Food spoilage and human infection due to growth of fungi are serious global problems. Furthermore, the problems are exacerbated by increasing resistance to the few antifungal compounds currently available. Thus, there is a need to develop novel approaches to target these organisms. We are studying two different groups of antifungal compounds; organic acid preservatives, which are used in manufactured foods and beverages to prevent yeast spoilage; and, antifungal peptides, for example, ranalexin and dermaseptin, which are produced as part of the innate immune system of amphibian skin.

        In the lab, we are using modern functional genomics techniques, including proteomics, DNA microarrays and a library of deletion strains representing the entire yeast genome to obtain fundamental understanding of, the mode of action of the above compounds, and inducible mechanisms of resistance. More specifically, we are aiming to identify changes in global gene/protein expression occurring in response to exposure to these compounds and subsequently identify the role these genes play in either the mode of action or conferring resistance. We are also attempting to characterise which regulatory and signalling proteins detect, transmit and alter gene expression in response to exposure to these compounds.






        Cresswell, Dr Will Reader
        (School of Biology)
        wrlc@st-and.ac.uk
        01334 463010
        Behavioural ecology and conservation ecology of birds
        keywords:
        Animal communication, Behavioural biology, Evolutionary biology, Zoology
        Dr Will Cresswell

        Publications in international, citation indexed, peer reviewed journals:

        1.      Stevens, M.C., Sheehan, D.K., Wilson, J.M., Buchanan, G.M. & Cresswell, W. (2009) Changes in Sahelian bird biodiversity and tree density over a five year period in Northern Nigeria. Bird Study in press.

        2.      Jones, T. & Cresswell, W. (2009) The phenology mismatch hypothesis: Are declines of migrant birds linked to uneven global change? Journal of Animal Ecology in press.

        3.      Manu, S., Imong, I.S. & Cresswell W. (2009) Bird species richness and diversity at montane IBA sites in South Eastern Nigeria. Bird Conservation International In press.

         

        4.      Sansom, A., Lind, J. & Cresswell, W. (2009) Individual behaviour and survival: the roles of predator avoidance, foraging success and vigilance. Behavioral Ecology 20:1168-1174.

        5.      Cresswell, W ., Clark, J. & Macleod, R. (2009) How climate change might influence the starvation-predation risk trade-off response. Proceedings of the Royal Society: Series B 276: 3553-3560.

        6.      W. Cresswell, W., Butler, S., Whittingham, M.J. &  Quinn. J.L. (2009) Very short delays prior to escape from potential predators may function efficiently as adaptive risk-assessment periods. Behaviour 146:795-813.

        7.      Brandt, M.J. & Cresswell W. (2009) Diurnal foraging routines in a tropical bird, the rock finch Lagonosticta sanguinodorsalis: how important is predation risk? Journal of Avian Biology 40:90-94.

        8.      Macleod, R., Clark, J. & Cresswell, W. (2008) The starvation-predation risk trade-off, body mass and population status in the Common Starling Sturnus vulgaris. Ibis 150 S1:199-208.

        9.      Cresswell W. & Whitfield D.P. (2008) How starvation risk in Redshanks results in predation mortality from Sparrowhawks. Ibis 150 S1:209-218.

        10.   Brandt, M.J. & Cresswell W. (2008) Breeding behaviour, home range and habitat selection in Rock Firefinches (Lagonosticta sanguinodorsalis) in the wet and dry season in central Nigeria. Ibis 150:495-507.

        11.   Sansom, S., Cresswell W., Minderman, J. & Lind, L. (2008) Vigilance benefits and competition costs in groups: do individual redshanks gain an overall foraging benefit? Animal Behaviour 75:1869-1875.

        12.   Cresswell, W. (2008) Non-lethal effects of predation risk in birds. Ibis150:3-17.

        13.   Garcia-del-Rey, E., Cresswell, W., Perrins, C.M. & Gosler, A.G. (2007). Evolutionary trends and extreme cases of life history traits in the Blue Tit (Parus caeruleus) on oceanic islands (Canary Islands) . Ardeola 54:27-39.

        14.   Garcia-del-Rey, E., & Cresswell, W.  (2007). The breeding biology of the endemic Berthelot’s Pipit Anthus berthelotii in a harsh oceanic island environment (Tenerife, Canary Islands). Ostrich 78:583-589.  

        15.   MacLeod, R., Lind,J., Clark J., & Cresswell W. (2007) Mass regulation in response to predation risk can indicate population declines. Ecology Letters 10: 945-955.

        16.   McGregor, R., Whittingham, M.J. & Cresswell, W. (2007) Survival rates of tropical birds in Nigeria, West Africa. Ibis 149:615-618.

        17.   Cresswell, W., Wilson, J.M., Vickery J., Jones, P. & Holt, S. (2007) Changes in densities of Sahelian bird species in response to recent habitat degradation. Ostrich 78:247-253.

        18.   Wilson, J.M. & Cresswell, W. (2007) Identification of potentially competing Afrotropical and Palearctic bird species in the Sahel. Ostrich 78:363-368.

        19.   McGregor, R.M., Ottosson, U. & Cresswell W. (2007) Moult of guinea savanna passerines in West Africa. Ostrich 78:287-290.

        20.   Manu, S. & Cresswell W. (2007) Addressing sampling bias in counting forest birds: a West African case study. Ostrich 78:281-286.

        21.   Cresswell, W., Lind, J., Quinn, J.L., Minderman, J. & Whitfield, D.P.  (2007) Ringing or colour-banding does not increase predation mortality in redshanks. Journal of Avian Biology 38:309-316.

        22.   Manu, S., Peach, W. & Cresswell, W. (2007) The effects of fragment size and degree of isolation on avian species richness in highly fragmented forest in West Africa. Ibis 149:287-297.

        23.   Watson, M., Aebischer, N.J. & Cresswell W. (2007) Vigilance and fitness in grey partridges Perdix perdix: the effects of group size and foraging-vigilance trade-offs on predation mortality. Journal of Animal Ecology 76:211-221.

        24.   Quinn, J.L., Whittingham, M.J., Butler, S.J. & Cresswell, W. (2006) Noise, predation risk compensation and vigilance in the chaffinch Fringilla coelebs . Journal of Avian Biology 37:601-608.

        25.   Wilson, J.M. & Cresswell, W. (2006) How robust are Palearctic migrants to habitat loss and degradation in the Sahel? Ibis 148:789-800.

        26.   Quinn, J.L. & Cresswell, W. (2006) Testing domains of danger in the selfish herd: sparrowhawks target widely spaced redshanks in flocks. Proceedings of the Royal Society: Series B273:2521-2526.

        27.   Watson M., Wilson J. M., Koshkin M., Sherbakov B., Karpov F., Gavrilov A., Schielzeth, H., Brombacher M., Collar N.J. & Cresswell W. (2006) Nest survival and productivity of the critically endangered Sociable Lapwing Vanellus gregarious. Ibis 148:489-502.

        28.   Garcia-del-Rey, E., Cresswell, W., Perrins, C. & Gosler, A. (2006) Variable effects of laying date on clutch size in the Canary Island Blue Tits (group). Ibis 148:564-567.  

        29.   Minderman, J., Lind, J. & Cresswell W. (2006) Behaviourally mediated indirect effects: Interference competition increases predation mortality in foraging redshanks. Journal of Animal Ecology 75:713-723.

        30.   Lind, J. & Cresswell, W. (2006) Anti-predation behaviour during bird migration; the benefit of studying multiple behavioural dimensions. Journal of Ornithology 147:310-316.

        31.   MacLeod R., Barnett P., Clark J., Cresswell W. (2006) Mass-dependent predation risk as a mechanism for house sparrow declines? Biology Letters 2:43-46.

        32.   Butler,S.J., Whittingham,M.J., Quinn,J.L. & Cresswell,W. (2006) Time in captivity and individual differences influence experimental success: foraging trials on wild-caught chaffinches. Behaviour 143: 535-548.

        33.   Garcia-del-Rey, E. & Cresswell, W. (2006) Population size and habitat selection of the Feurteventura Blue Tit (Parus caeruleus degener). Ostrich 77:105-108.

        34.   Garcia-del-Rey, E. & Cresswell, W. (2005) Density estimates, microhabitat selection, and foraging behaviour of the endemic blue chaffinch Fringilla teydae teydae on Tenerife (Canary Islands). Ardeola 52: 305-317.

        35.   Manu, S., Peach, W., Bowden, C. & Cresswell W. (2005) The effects of forest fragmentation on the population density and distribution of the globally endangered Ibadan Malimbe Malimbus ibadanensis. Bird Conservation International 15: 275-285.

        36.   Quinn, J.L. & Cresswell, W. (2005) Personality and anti-predation behaviour in the chaffinch Fringilla coelebs. Behaviour 142: 1383-1408.

        37.   MacLeod, R., Gosler, A. & Cresswell, W. (2005). Diurnal mass gain strategies and perceived predation risk in the great tit, Parus major. Journal of Animal Ecology 74:956-964.

        38.   Lind, J. & Cresswell, W. (2005). Determining the fitness consequences of anti-predation behaviour. Behavioral Ecology 16:945-956.

        39.   Quinn, J.L. & Cresswell, W. (2005) Escape response delays in wintering redshank Tringa totanus flocks are explained by the perceptual limit and economic hypotheses. Animal Behaviour 69:1285-1292.

        40.   Githiru, M., Lens, L. & Cresswell W. (2005) Nest predation in a fragmented Afrotropical forest: evidence from natural and artificial nests. Biological Conservation 123:189-196.

        41.   MacLeod, R., Barnett, R.B., Clark, J. & Cresswell, W. (2005) Body mass change strategies in blackbirds Turdus merula: the starvation-predation risk trade-off. Journal of Animal Ecology 74:292-302.

        42.   Butler,S.J., Whittingham,M.J., Quinn,J.L. & Cresswell,W. (2005) Quantifying the interaction between food density and habitat structure in determining patch selection. Animal Behaviour 69:337-343.

        43.   Whittingham,M.J., Butler,S.J., Quinn,J.L. & Cresswell,W. (2004) The effect of limited visibility on vigilance behaviour and speed of predator detection. Oikos 106:377-385.

        44.   Cresswell, W., Holt, S., Reid, J.M., Whitfield, D.P., Mellanby, R.J., Norton, D., & Waldron, S. (2004) The energetic costs of egg heating constrain incubation attendance but do not determine daily energy expenditure in the Pectoral Sandpiper. Behavioral Ecology 15:498-507.

        45.   Catry, P., Campos, A., Almada, V. & Cresswell, W. (2004) Winter segregation of migrant European Robins Erithacus rubecula in relation to sex, age and size. Journal of Avian Biology 35:204-209.

        46.   Quinn, J.L. & Cresswell, W. (2004). Predator hunting behaviour and prey vulnerability. Journal of Animal Ecology 73:143-154.

        47.   Cresswell, W. & Quinn, J. (2004). Faced with a choice, predators select the most vulnerable group: implications for both predators and prey for monitoring relative vulnerability. Oikos 104:71-76.

        48.   Yasué, M., Quinn, J.L. & Cresswell, W. (2003). Multiple effects of weather on the starvation and predation risk trade-off in choice of feeding location in redshanks. Functional Ecology 17:727-736.

        49.   Cresswell, W., Lind, J., Kaby, U., Quinn, J.L. & Jakobsson, S. (2003). Does an opportunistic predator preferentially attack non-vigilant prey? Animal Behaviour 66: 643-648.

        50.   Cresswell,W. (2003). Testing the mass-dependent predation hypothesis: in European blackbirds poor foragers have higher overwinter body reserves. Animal Behaviour 65:1035-1044.

        51.   Cresswell, W., Quinn, J.L., Whittingham, M.J., & Butler, S. (2003). Good foragers can also be good at detecting predators. Proceedings of the Royal Society: Series B 270:1069-1076.

        52.   Cresswell W. & McCleery, R. (2003) How great tits maintain synchronisation of their hatch date with food supply in response to long term variability in temperature. Journal of Animal Ecology 72:356-366.

        53.   Cresswell, W., Holt, S., Reid, J.M., Whitfield, D.P. & Mellanby, R.J. (2003) Do the energetic demands of incubation constrain incubation scheduling in a biparental species. Behavioral Ecology 14:97-102.

        54.   Smith, R.D., Ruxton, G.D. & Cresswell, W. (2002) Do kleptoparasites reduce their own foraging effort in order to detect kleptoparasitic opportunities? An empirical test of a key assumption of kleptoparasitic models. Oikos 97: 205-212.

        55.   Reid, J.M., Cresswell,W., Holt, S., Mellanby, R.J., Whitfield, D.P. & Ruxton, G.D. (2002). Nest scrape design and clutch heat loss in Pectoral Sandpipers (Calidris melanotos). Functional Ecology 16:305-312.

        56.   McGowan, A., Cresswell,W. & Ruxton, G.D. (2002) The effects of daily weather variation on foraging and responsiveness to disturbance in overwintering Red Knot (Calidris canutus). Ardea 90:229-237.

        57.   Smith, R.D., Ruxton, G.D. & Cresswell, W. (2001) Patch choice decisions of wild blackbirds: the role of pre-harvest public information Animal Behaviour 61:1113-1124.

        58.   Smith, R.D., Ruxton, G.D. & Cresswell, W. (2001) Dominance and feeding interference in small groups of blackbirds Behavioral Ecology 12:475-481.

        59.   Cresswell, W. (2001). Relative competitive ability does not change over time in blackbirds. Journal of Animal Ecology 70:218-227.

        60.   Cresswell, W. , Smith, R.D. & Ruxton, G.D. (2001). Absolute foraging rate and susceptibility to interference competition in blackbirds varies with patch conditions. Journal of Animal Ecology 70:228-236.

        61.   Cresswell, W. Hilton, G.M.,& Ruxton, G.D. (2000) Evidence for a rule governing the avoidance of superfluous escape flights. Proceedings of the Royal Society: Series B 267:733-737.

        62.   Cresswell, W. (1999). Travel distance and mass gain in wintering blackbirds. Animal Behaviour 58:1109-1116.

        63.   Hilton, G.M., Ruxton, G.D. & Cresswell, W. (1999) Choice of foraging area with respect to predation risk in redshanks: the effects of weather and predator activity. Oikos 87:295-302.

        64.   Hilton, G.M., Cresswell, W. & Ruxton, G.D. (1999) Intra-flock variation in the speed of escape-flight response on attack by an avian predator. Behavioural Ecology 10: 391-395.

        65.   Whitfield D.P., Cresswell W., Ashmole N.P., Clark N.A. & Evans A.D. (1999) No evidence for Sparrowhawks selecting Redshanks according to size and condition. Journal of Avian Biology 30:31-39.

        66.   Cresswell, W., Yerokhov, S., Berezovikov, N., Mellanby, R., Bright, S., Catry, P., Chaves, J., Freile, J., Gretton, A., Zykin, A., McGregor, R. & McLaughlin, D. (1999). Important wetlands in northern and eastern Kazakstan. Wildfowl 50:181-194.

        67.   Vickery, J., Thomas D., Rowcliffe, M., Cresswell, W., Jones, P. & Holt, S. (1999) Habitat selection of whitethroats during spring passage in the Sahel zone of northern Nigeria. Bird Study 46: 348-355.

        68.   Cresswell, W., M. Hughes, R. Mellanby, S. Bright, P. Catry, J. Chaves, J. Freile, A. Gabela, H. Martineau, R. MacLeod, F. McPhee, N. Anderson, S. Holt, S. Barabas, C. Chapel & T. Sanchez (1999) Densities and habitat preferences of Andean cloud-forest birds in pristine and degraded habitats in northeastern Ecuador. Bird Conservation International 9:124-145.

        69.   Cresswell, W. (1998) Relative competitive ability changes with competitor density: evidence from foraging blackbirds. Animal Behaviour 56:1367-1373.

        70.   Cresswell, W. (1998) Variation in the strength of interference competition with resource density in blackbirds Turdus merula. Oikos 81:152-160.

        71.   Cresswell, W. (1998) Diurnal and seasonal mass variation in blackbirds Turdus merula: consequences for mass-dependent predation risk. Journal of Animal Ecology 67:78-90.

        72.   Cresswell, W. (1997) Interference competition at low competitor densities in blackbirds Turdus merula. Journal of Animal Ecology 66:461-471.

        73.   Cresswell, W. (1997) Nest predation rates and nest detectability at different stages of breeding in blackbirds Turdus merula. Journal of Avian Biology 28:296-302.

        74.   Cresswell, W. (1997) Nest predation: the relative effects of nest characteristics, clutch size and parental behaviour. Animal Behaviour 53:93-103.

        75.   Cresswell, W., Irwin, M., Jensen, M., Mee, A., Mellanby, R., McKean, M. & Milne, L. (1997) Population estimates and distribution changes of landbirds on Silhouette Island, Seychelles. Ostrich 68: 50-57.

        76.   Cresswell, W. (1996) Surprise as a winter hunting strategy in Sparrowhawks Accipiter nisus, Peregrines Falco peregrinus and Merlins F. columbarius. Ibis 138:684-692.

        77.   Jones, P., Vickery, J., Holt, S., & Cresswell, W. (1996) A preliminary assessment of some factors influencing the density and distribution of Palearctic passerine migrants wintering in the Sahel zone of West Africa. Bird Study 43:73-84.

        78.   Cresswell, W. (1995) Selection of avian prey by wintering sparrowhawks Accipiter nisus in southern Scotland. Ardea 83:381-389.

        79.   Cresswell, W. (1994) Age-dependent choice of redshank (Tringa totanus) feeding location: profitability or risk? Journal of Animal Ecology 63:589-600.

        80.   Cresswell, W. (1994) Flocking is an effective anti-predation strategy in Redshanks, Tringa totanus. Animal Behaviour 47: 433-442.

        81.   Cresswell, W. (1994) The function of alarm calls in redshanks, Tringa totanus. Animal Behaviour 47:736-738.

        82.   Cresswell, W. (1994) Song as a pursuit-deterrent signal, and its occurrence relative to other anti-predation behaviours of skylark (Alauda arvensis) on attack by merlins (Falco columbarius). Behavioural Ecology and Sociobiology 34:217-223.

        83.   Cresswell, W. & Whitfield, D.P. (1994) The effects of raptor predation on wintering wader populations at the Tyninghame estuary, southeast Scotland. Ibis 136:223-232.

        84.   Cresswell, W. (1993) Escape responses by redshanks, Tringa totanus, on attack by avian predators. Animal Behaviour 46:609-611.

        Other peer reviewed publications:

        85.   Cresswell, W. , Boyd, M. & Stevens, M. (2009) . Movements of Palearctic and Afrotropical bird species during the dry season (November–February) within Nigeria. pp. 18–28. In: Harebottle, D.M., Craig, A.J.F.K., Anderson, M.D., Rakotomanana, H. & Muchai. (eds). Proceedings of the 12th Pan African Ornithological Congress, 2008. Cape Town, Animal Demography Unit

        86.   Cresswell, W. (2009) Empirical studies of predator and prey behaviour. In The Encyclopedia of Animal Behaviour. Elsevier: Oxford. In press.

        87.   Cresswell, W. (2009) The use of mass and fat reserve measurements from ringing studies to assess body condition. Ringing & Migration 24: 227-232.

        88.   Manu, S., Peach, W. & Cresswell, W. 2005. Notes on the natural history of the Ibadan Malimbe Malimbus ibadanensis, a threatened Nigerian endemic. Malimbus 27:33-39.

        89.   Cresswell, W. (2004) Kleptoparasitism rates and aggressive interactions between raptors. In Raptors Worldwide: Proceedings of the 6th World Conference on Birds of Prey and Owls. Chancellor, R. D. & B.-U. Meyburg eds. pp 805 – 814.

        90.   Manu, S. & Cresswell, W. (2002). The effects of forest fragmentation on Palearctic migrants in south western Nigeria. In Wings Over Africa: Proceedings of the International Seminar on Bird Migration: Research, Conservation, Education and Flight Safety (Eds. Leshem, Y., Froneman, A., Mundy, P. Shamir, H.), pp 143 – 150. International Center for the Study of Bird Migration, Israel.

        91.   Cresswell, W., R. Mellanby, S. Bright, P. Catry, J. Chaves, J. Freile, A. Gabela, M. Hughes, H. Martineau, R. MacLeod, F. McPhee, , N. Anderson, S. Holt, S. Barabas, C. Chapel & T. Sanchez. (1999) Birds of the Guandera Reserve, Carchi province, northeastern Ecuador. Cotinga 11:55-63.

        92.   Cresswell, W. (1997). Carrion crows catching waders. British Birds 90:366.

        93.   Cresswell, W. (1997). Caching of prey by carrion crows. British Birds 90 366-367.




        More about Dr Will Cresswell:
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        Doherty, Dr Gayle H Research Fellow
        (School of Biology)
        ghm@st-and.ac.uk
        01334 463611 (lab 463544)
        Cell death during neurodevelopment and neurodegeneration
        keywords:
        Cell signalling, Developmental biology, Neurobiology
        Dr Gayle H Doherty My research focuses on the signalling pathways that determine whether a neuron lives or dies, both during development and as part of the ageing process.
        The cells that make up the nervous system die at two distinct times during the lifetime of an organism. These periods of neuron loss occur during embryonic development and also during ageing. Our research focuses on the factors that determine how, when and why neurons die at these times.
        The earliest stage of nervous system development is termed neurulation and at this time, neurons are already dying. Using Xenopus laevis as a model we are investigating what role this loss of cells plays in determining the future anatomy and physiology of the central nervous system. We are also considerating the effects that environmental agents have on cell death during neurulation and how this might relate to the development of neural tube defects such as spina bifida.
        Later on in embryonic development there is a wave of cell death as neurons innervate their target fields. We are investigating the intracellular and extracellular factors that control this in several populations of murine CNS neurons.
        Finally we are looking at the causes of cell death in ageing and neurodegenrative diseases with emphasis placed on Alzheimer's Disease, ataxia, Parkinson's disease and Huntington's disease. Again we are interested in the intracellular and extracellular factors that control this loss of cells. In addition we are investigating factors that influence the physiology of these neurons.






        Duck, Mr Callan Senior Research Scientist
        (School of Biology)
        cdd1@st-and.ac.uk
        01334 462636
        Monitoring populations of harbour (= common) and grey seals in Scotland
        keywords:
        Marine mammals, Population biology


        More about Mr Callan Duck:
        School of Biology Staff Profile

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        Elliott, Prof Richard Professor of Virology
        (School of Biology)
        rme1@st-and.ac.uk
        01334 463396
        Molecular biology of RNA virus-host interactions
        keywords:
        Cell biology, Molecular biology, Virology
        Prof Richard Elliott The main focus of my group’s work concerns viruses in the family Bunyaviridae. This is the largest grouping of viruses with RNA genomes, containing more than 350 named isolates. The viruses are characterized by a tripartite, single-stranded RNA genome that encodes the gene-products using a negative-sense or ambisense strategy. The family is classified into five genera: Orthobunyavirus, Hantavirus, Nairovirus, Phlebovirus and Tospovirus. Most of these viruses (except hantaviruses) are transmitted by arthropod vectors, and many are associated with diseases in humans, domesticated animals or plants. Work in my laboratory has focussed on Bunyamwera virus, the prototype of the family, as a model for the more pathogenic members of the Bunyaviridae. The emphasis of the research has been on the molecular characterization of the viral genome segments and their expression, functional analysis of the viral proteins, and interaction of bunyaviruses with the cells they infect. We established the first reverse genetic system for bunyaviruses whereby infectious bunyavirus can be recovered entirely from cDNA clones. This was a most significant achievement as it allows the full application of recombinant DNA technology to this class of virus, and was the first occasion that any segmented genome negative-strand RNA virus had been ‘rescued’ from cDNA. Using the rescue technology we created a recombinant bunyavirus that does not express one of the viral non-structural proteins and showed that the protein in question, termed NSs, is an antagonsist of the host antiviral defence mechanism and a potent inhibitor of mammalian cell RNA polymerase II. Other studies exploiting the rescue protocol include analysis of the untranslated regions of the bunyavirus genome and the production of attenuated viruses by rearrangement of coding and noncoding sequences. Our studies suggest a way forward in the design of modified bunyaviruses with vaccine potential against the important human pathogenic members of the group. In addition, we have generated recombinant viruses expressing green fluorescent protein that allow us to monitor the course of infection in real time by fluorescence microscopy.
        Duration
        Title
        Sponsor
        2004-2009 Structural proteomics, targeting biosynthetic pathways, pathogenesis and DNA processing BBSRC
        2003-2006 Cellular and molecular factors affecting replication of Norwalk-like viruses Wellcome Trust
        2002-2007 Confocal Microscope Wellcome Trust
        2001-2006 Bunyavirus replication and interactions with the host cell Wellcome Trust
        2000-2003 The Translation Efficency of the 5' Untranslated Region (UTR) Enhancement by the 3'UTR of Hepatitis C Virus Varients in the Liver and Serum Wellcome Trust
        1999-2003 Provision of an Automated Cell Sorter Facility Wellcome Trust
        1999-2003 Nairovirus RNA Synthesis and Virus Rescue Wellcome Trust
        1999-2002 Wellcome Trust Equipment Grant: AB1 377 DNA Sequencer Wellcome Trust
        1999-2004 Co-operative Group Grant: Viruses of Medical Importance MRC
        1998-2001 Development of a System to Study Hepatitis C Virus Replication MRC
        1998-2001 Specificity of the Hepatitis C Virus Protease Ministerio da Ciencia e da Tecnologia
        1997-2000 Hantavirus infections in Europe: molecular virology, epidemiology and ways of control European Commission
        1996-1999 Hantavirus RNA synthesis and glycoprotein targeting to the Golgi MRC
        1996-2001 Molecular analyses of bunyavirus replication Wellcome Trust
        1996-1999 Provision of a shared automated DNA sequencing facility Wellcome Trust
        1996-1999 Analysis of bunyavirus RNA synthesis by a reverse genetic approach MRC
        1995-1998 Hepatitis C virus 5' untranslated region as a novel antiviral target MRC





        Fedak, Prof Michael Professor
        (School of Biology)
        maf3@st-and.ac.uk
        01334 463218
        Ecology, physiology and life history of marine mammals
        keywords:
        Behavioural biology, Marine biology, Marine mammals, Zoology
        Prof Michael Fedak

        Ecology, physiology and life history of marine mammals.


        Interactions between the foraging behaviour and diving physiology: Interactions between foraging ecology and reproductive success; parental investment; interactions between marine mammals and the exploitation of marine resources; use of telemetry and remote sensing to study marine mammals at sea.


        Ecology, physiology and life history of marine mammals

        Interactions between the foraging behaviour and diving physiology:Interactions between foraging ecology and reproductive success;parental investment; interactions between marine mammals and theexploitation of marine resources; use of telemetry and remotesensing to study marine mammals at sea.

        Research group:

        NERC Sea Mammal Research Unit

        Research students:

        Mr. David Thompson (with J. Parker, University of Liverpool)

        Funded collaborations:

        ELIFONTS (FRS Marine Laboratory, Aberdeen; Department of MarineSciences and Coastal Management, University of Newcastle; Institutefor Terrestrial Ecology, Banchory; Danish Institute for FisheriesResearch, Copenhagen); IBN-DLO, Netherlands; Australian AntarcticDivision.






        Ferrier, Dr Dave RCUK Fellow in Marine Biology
        (School of Biology)
        dekf@st-and.ac.uk
        01334 463480
        Evolutionary Developmental Biology
        keywords:
        Developmental biology, Evolutionary biology, Genomics, Marine biology, Zoology
        Dr Dave Ferrier

        We aim to understand how the diversity of form in the animal kingdom evolved. The focus of our research is the connection between the evolution of animal genome organisation and development, with a particular concentration on the homeobox-containing genes. The Hox gene cluster is established as a corner-stone of Evolutionary Developmental Biology, but much about the evolution of its organisation and mode of operation remains unknown. Also the Hox cluster is not unique as a homeobox gene cluster controlling animal development, further clusters being the ParaHox and NK clusters, all of which evolved within larger arrays of homeobox genes (the Mega-cluster and Super-Hox cluster). We utilize a variety of organisms in our research (including amphioxus, sea squirts, polychaetes and priapulids), chosen from key points in the phylogeny of the animals to enable reconstruction of the ancestral conditions at major nodes in the animal kingdom; the origin of bilaterians, protostomes, deuterostomes, chordates and vertebrates. 





        Gillespie, Dr Douglas Researcher
        (School of Biology)
        dg50@st-and.ac.uk
        01334 462663
        Passive acoustic monitoring of marine mammals
        keywords:
        Conservation biology, Marine mammals, Population biology

        Passive Acoustics

        Passive acoustic monitoring (PAM) is an effective way of detecting many species of cetacean and has an important role in abundance surveys and in detecting cetaceans in the vicinity of certain human activities which may cause harm, such as seismic surveys, military sonar exercises and even shipping.

        Passive acoustic detection of beaked whales

        Beaked whales are one of the least known marine mammal species due to their offshore habitat and deep diving behaviour. We are investigating the use of passive acoustics as a means of detecting beaked whales using towed hydrophones close to the surface. Several beaked whale species are known to produce narrow band high frequency clicks during deep foraging dives. Many beaked whale species have not yet been recorded.

        The four main focuses of our research are

        1. To assess how efficiently beaked whale can be detected.
        2. To develop software which can automatically detect beaked whale clicks and tell them apart from other species.
        3. To try to record the sounds of previously unrecorded beaked whale species.
        4. To test the effectiveness of passive acoustic monitoring in developing habitat use models for beaked whales.

        PAMGUARD Software

        PAMGUARD is open source software for the detection and localisation of marine mammal vocalisations. It is optimised for real time use in the field and has applications both in abundance survey and in mitigation monitoring.  I manage the PAMGUARD project and wrote both the core structure of the PAMGUARD and many of the detection, localisation and mapping modules within the software.


        PAMGUARD Passive acoustic monitoring software

        Acoustic detection and habitat modeling of beaked whales.






        Gordon, Dr Jonathan Research Fellow
        (School of Biology)
        jg20@st-and.ac.uk
        01334 462637


        More about Dr Jonathan Gordon:
        School of Biology Staff Profile

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        Graves, Dr Jeff Senior Lecturer
        (School of Biology)
        jag@st-and.ac.uk
        01334 463518/3358
        Mating behaviour, maternity and parentage and population structure
        keywords:
        Behavioural biology, Evolutionary biology, Zoology
        Dr Jeff Graves

        Behavioural Ecology and Molecular Ecology


        The use of molecular markers for measuring parentage and population structure and molecular phylogenies